Inheritance of Phytophthora root rot resistance in red raspberry determined by generation means and molecular linkage analysis.
Identifieur interne : 001E43 ( Main/Exploration ); précédent : 001E42; suivant : 001E44Inheritance of Phytophthora root rot resistance in red raspberry determined by generation means and molecular linkage analysis.
Auteurs : Jeremy A. Pattison [États-Unis] ; Suren K. Samuelian ; Courtney A. WeberSource :
- TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik [ 0040-5752 ] ; 2007.
Descripteurs français
- KwdFr :
- Cartographie chromosomique (MeSH), Chromosomes de plante (MeSH), Immunité innée (génétique), Liaison génétique (MeSH), Locus de caractère quantitatif (MeSH), Maladies des plantes (génétique), Marqueurs génétiques (MeSH), Modes de transmission héréditaire (MeSH), Phytophthora (physiologie), Polymorphisme de restriction (MeSH), Rosaceae (génétique), Rosaceae (parasitologie).
- MESH :
- génétique : Immunité innée, Maladies des plantes, Rosaceae.
- parasitologie : Rosaceae.
- physiologie : Phytophthora.
- Cartographie chromosomique, Chromosomes de plante, Liaison génétique, Locus de caractère quantitatif, Marqueurs génétiques, Modes de transmission héréditaire, Polymorphisme de restriction.
English descriptors
- KwdEn :
- Chromosome Mapping (MeSH), Chromosomes, Plant (MeSH), Genetic Linkage (MeSH), Genetic Markers (MeSH), Immunity, Innate (genetics), Inheritance Patterns (MeSH), Phytophthora (physiology), Plant Diseases (genetics), Polymorphism, Restriction Fragment Length (MeSH), Quantitative Trait Loci (MeSH), Rosaceae (genetics), Rosaceae (parasitology).
- MESH :
- chemical : Genetic Markers.
- genetics : Immunity, Innate, Plant Diseases, Rosaceae.
- parasitology : Rosaceae.
- physiology : Phytophthora.
- Chromosome Mapping, Chromosomes, Plant, Genetic Linkage, Inheritance Patterns, Polymorphism, Restriction Fragment Length, Quantitative Trait Loci.
Abstract
Classical and molecular methodologies were used to determine the inheritance of Phytophthora root rot (PRR) resistance in red raspberry. The varieties 'Latham' and 'Titan,' resistant and susceptible, respectively, were used to create F(1), F(2), B(1), B(2), and S(1) populations for analysis. Generational means analysis was used to calculate the components of genetic variation and estimates of narrow and broad sense heritability for the plant disease index and the incidence of petiole lesions. The plant disease index showed additive genetic variation with additional significant interactions, but the incidence of petiole lesions was non-additive. A dominant, two-gene model was shown to be the best fit for the observed segregation ratios when classification for resistance was based on a combination of all criteria measured. Molecular linkage maps were generated from the segregating B(2) population. Linkage maps of both parents were constructed from amplified fragment length polymorphism (AFLP), Random amplified polymorphic DNA (RAPD), and uncharacterized resistant gene analog polymorphism (RGAP) markers with seven linkage groups each totaling 440 and 370 cM of genetic distance, respectively. An analysis of the distributional extremes of the B(2) population identified several RAPD markers clustered on two linkage groups associated with PRR resistance. QTL analysis identified two similar genomic regions on each map that explained significant percentages of phenotypic variation observed for the disease assessment criteria. Genetic mapping supports the dominant two-gene model developed from generational means analysis. The results reconcile conflicting reports on inheritance of PRR resistance, provide a basis for further investigation of durable resistance to Phytophthora caused diseases, and indicates that recurrent selection is the appropriate approach for the development of new resistant cultivars.
DOI: 10.1007/s00122-007-0558-5
PubMed: 17592602
Affiliations:
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The varieties 'Latham' and 'Titan,' resistant and susceptible, respectively, were used to create F(1), F(2), B(1), B(2), and S(1) populations for analysis. Generational means analysis was used to calculate the components of genetic variation and estimates of narrow and broad sense heritability for the plant disease index and the incidence of petiole lesions. The plant disease index showed additive genetic variation with additional significant interactions, but the incidence of petiole lesions was non-additive. A dominant, two-gene model was shown to be the best fit for the observed segregation ratios when classification for resistance was based on a combination of all criteria measured. Molecular linkage maps were generated from the segregating B(2) population. Linkage maps of both parents were constructed from amplified fragment length polymorphism (AFLP), Random amplified polymorphic DNA (RAPD), and uncharacterized resistant gene analog polymorphism (RGAP) markers with seven linkage groups each totaling 440 and 370 cM of genetic distance, respectively. An analysis of the distributional extremes of the B(2) population identified several RAPD markers clustered on two linkage groups associated with PRR resistance. QTL analysis identified two similar genomic regions on each map that explained significant percentages of phenotypic variation observed for the disease assessment criteria. Genetic mapping supports the dominant two-gene model developed from generational means analysis. The results reconcile conflicting reports on inheritance of PRR resistance, provide a basis for further investigation of durable resistance to Phytophthora caused diseases, and indicates that recurrent selection is the appropriate approach for the development of new resistant cultivars.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">17592602</PMID><DateCompleted><Year>2007</Year><Month>08</Month><Day>29</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0040-5752</ISSN><JournalIssue CitedMedium="Print"><Volume>115</Volume><Issue>2</Issue><PubDate><Year>2007</Year><Month>Jul</Month></PubDate></JournalIssue><Title>TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik</Title><ISOAbbreviation>Theor Appl Genet</ISOAbbreviation></Journal><ArticleTitle>Inheritance of Phytophthora root rot resistance in red raspberry determined by generation means and molecular linkage analysis.</ArticleTitle><Pagination><MedlinePgn>225-36</MedlinePgn></Pagination><Abstract><AbstractText>Classical and molecular methodologies were used to determine the inheritance of Phytophthora root rot (PRR) resistance in red raspberry. The varieties 'Latham' and 'Titan,' resistant and susceptible, respectively, were used to create F(1), F(2), B(1), B(2), and S(1) populations for analysis. Generational means analysis was used to calculate the components of genetic variation and estimates of narrow and broad sense heritability for the plant disease index and the incidence of petiole lesions. The plant disease index showed additive genetic variation with additional significant interactions, but the incidence of petiole lesions was non-additive. A dominant, two-gene model was shown to be the best fit for the observed segregation ratios when classification for resistance was based on a combination of all criteria measured. Molecular linkage maps were generated from the segregating B(2) population. Linkage maps of both parents were constructed from amplified fragment length polymorphism (AFLP), Random amplified polymorphic DNA (RAPD), and uncharacterized resistant gene analog polymorphism (RGAP) markers with seven linkage groups each totaling 440 and 370 cM of genetic distance, respectively. An analysis of the distributional extremes of the B(2) population identified several RAPD markers clustered on two linkage groups associated with PRR resistance. QTL analysis identified two similar genomic regions on each map that explained significant percentages of phenotypic variation observed for the disease assessment criteria. Genetic mapping supports the dominant two-gene model developed from generational means analysis. The results reconcile conflicting reports on inheritance of PRR resistance, provide a basis for further investigation of durable resistance to Phytophthora caused diseases, and indicates that recurrent selection is the appropriate approach for the development of new resistant cultivars.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Pattison</LastName><ForeName>Jeremy A</ForeName><Initials>JA</Initials><AffiliationInfo><Affiliation>Virginia Polytechnic Institute and State University, Southern Piedmont Agricultural Research and Extension Center, 2375 Darvills Road, Blackstone, VA 23824, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Samuelian</LastName><ForeName>Suren K</ForeName><Initials>SK</Initials></Author><Author ValidYN="Y"><LastName>Weber</LastName><ForeName>Courtney A</ForeName><Initials>CA</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2007</Year><Month>05</Month><Day>22</Day></ArticleDate></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Theor Appl Genet</MedlineTA><NlmUniqueID>0145600</NlmUniqueID><ISSNLinking>0040-5752</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005819">Genetic Markers</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D002874" MajorTopicYN="N">Chromosome Mapping</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032461" MajorTopicYN="N">Chromosomes, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008040" MajorTopicYN="Y">Genetic Linkage</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005819" MajorTopicYN="N">Genetic Markers</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D007113" MajorTopicYN="N">Immunity, Innate</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D040582" MajorTopicYN="N">Inheritance Patterns</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010838" MajorTopicYN="N">Phytophthora</DescriptorName><QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012150" MajorTopicYN="N">Polymorphism, Restriction Fragment Length</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D040641" MajorTopicYN="N">Quantitative Trait Loci</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D027824" 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IdType="doi">10.1007/s00122-007-0558-5</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Proc Natl Acad Sci U S A. 1996 Oct 15;93(21):11751-6</Citation><ArticleIdList><ArticleId IdType="pubmed">8876209</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 1995 Nov 11;23(21):4407-14</Citation><ArticleIdList><ArticleId IdType="pubmed">7501463</ArticleId></ArticleIdList></Reference><Reference><Citation>Theor Appl Genet. 1994 Nov;89(5):606-14</Citation><ArticleIdList><ArticleId IdType="pubmed">24177937</ArticleId></ArticleIdList></Reference><Reference><Citation>Theor Appl Genet. 2004 Aug;109(4):740-9</Citation><ArticleIdList><ArticleId IdType="pubmed">15127204</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Genet Genomics. 2003 Aug;269(5):612-23</Citation><ArticleIdList><ArticleId IdType="pubmed">12884009</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Microbe Interact. 1998 Aug;11(8):815-23</Citation><ArticleIdList><ArticleId IdType="pubmed">9675895</ArticleId></ArticleIdList></Reference><Reference><Citation>Theor Appl Genet. 2004 Nov;109(7):1385-91</Citation><ArticleIdList><ArticleId IdType="pubmed">15290052</ArticleId></ArticleIdList></Reference><Reference><Citation>Theor Appl Genet. 2003 May;106(8):1497-508</Citation><ArticleIdList><ArticleId IdType="pubmed">12677403</ArticleId></ArticleIdList></Reference><Reference><Citation>Theor Appl Genet. 2002 Dec;106(1):163-72</Citation><ArticleIdList><ArticleId IdType="pubmed">12582885</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Genet Genomics. 2003 Aug;269(5):658-71</Citation><ArticleIdList><ArticleId IdType="pubmed">12827500</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 1996 Oct 15;93(21):11746-50</Citation><ArticleIdList><ArticleId IdType="pubmed">8876208</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Microbe Interact. 1998 Oct;11(10):968-78</Citation><ArticleIdList><ArticleId IdType="pubmed">9768514</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Genet. 1996 Dec;14(4):421-9</Citation><ArticleIdList><ArticleId IdType="pubmed">8944022</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>États-Unis</li></country><region><li>Virginie</li></region></list><tree><noCountry><name sortKey="Samuelian, Suren K" sort="Samuelian, Suren K" uniqKey="Samuelian S" first="Suren K" last="Samuelian">Suren K. Samuelian</name><name sortKey="Weber, Courtney A" sort="Weber, Courtney A" uniqKey="Weber C" first="Courtney A" last="Weber">Courtney A. Weber</name></noCountry><country name="États-Unis"><region name="Virginie"><name sortKey="Pattison, Jeremy A" sort="Pattison, Jeremy A" uniqKey="Pattison J" first="Jeremy A" last="Pattison">Jeremy A. Pattison</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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